Index _ | A | B | C | D | E | F | G | H | I | L | M | N | P | R | S | T | U | W _ _compute_diffmap() (in module FACSPy.tl) _compute_pca() (in module FACSPy.tl) _compute_tsne() (in module FACSPy.tl) _compute_umap() (in module FACSPy.tl) A add_external_compensation() (FACSPy.dt.FlowJoWorkspace method) add_new_alias() (FACSPy.FACSPyConfig method) annotate() (FACSPy.dt.Metadata method) B biax() (in module FACSPy.pl) C calculate_cofactors() (in module FACSPy.dt) cell_counts() (in module FACSPy.pl) cluster_abundance() (in module FACSPy.pl) cluster_fop() (in module FACSPy.pl) cluster_frequency() (in module FACSPy.pl) cluster_heatmap() (in module FACSPy.pl) cluster_mfi() (in module FACSPy.pl) cofactor_distribution() (in module FACSPy.pl) CofactorTable (class in FACSPy.dt) convert_cluster_to_gate() (in module FACSPy) convert_gate_to_obs() (in module FACSPy) correct_expression() (in module FACSPy.tl) create_dataset() (in module FACSPy.dt) create_empty_metadata() (in module FACSPy.dt) create_panel_from_fcs() (in module FACSPy.dt) D default_categorical_cmap (FACSPy.FACSPyConfig property) default_gate (FACSPy.FACSPyConfig property) default_layer (FACSPy.FACSPyConfig property) diffmap() (in module FACSPy.pl) (in module FACSPy.tl) DivaWorkspace (class in FACSPy.dt) E equalize_groups() (in module FACSPy) expression_heatmap() (in module FACSPy.pl) F FACSPy.dt module FACSPy.ml module FACSPy.pl module FACSPy.sync module FACSPy.tl module FACSPyConfig (class in FACSPy) FlowJoWorkspace (class in FACSPy.dt) flowsom() (in module FACSPy.tl) fold_change() (in module FACSPy.pl) fop() (in module FACSPy.pl) (in module FACSPy.tl) G gate_aliases (FACSPy.FACSPyConfig property) gate_dataset() (FACSPy.ml.supervisedGating method) gate_frequencies() (in module FACSPy.tl) gate_frequencies_mem() (in module FACSPy.tl) gate_frequency() (in module FACSPy.pl) gating_strategy() (in module FACSPy.pl) get_antigens() (FACSPy.dt.Panel method) get_channels() (FACSPy.dt.Panel method) get_cofactor() (FACSPy.dt.CofactorTable method) get_dataset() (FACSPy.ml.supervisedGating method) (FACSPy.ml.unsupervisedGating method) get_factors() (FACSPy.dt.Metadata method) group_variable() (FACSPy.dt.Metadata method) H harmony_integrate() (in module FACSPy.tl) I identify_populations() (FACSPy.ml.unsupervisedGating method) L leiden() (in module FACSPy.tl) M marker_correlation() (in module FACSPy.pl) marker_density() (in module FACSPy.pl) mds_samplewise() (in module FACSPy.pl) (in module FACSPy.tl) Metadata (class in FACSPy.dt) metadata() (in module FACSPy.pl) mfi() (in module FACSPy.pl) (in module FACSPy.tl) module FACSPy.dt FACSPy.ml FACSPy.pl FACSPy.sync FACSPy.tl N n_jobs (FACSPy.FACSPyConfig property) neighbors() (in module FACSPy.tl) P Panel (class in FACSPy.dt) parc() (in module FACSPy.tl) pca() (in module FACSPy.pl) (in module FACSPy.tl) pca_samplewise() (in module FACSPy.pl) (in module FACSPy.tl) phenograph() (in module FACSPy.tl) R read_dataset() (in module FACSPy) remove_channel() (in module FACSPy) remove_unnamed_channels() (in module FACSPy) rename_antigen() (FACSPy.dt.Panel method) rename_channel() (FACSPy.dt.CofactorTable method) (FACSPy.dt.Panel method) (in module FACSPy) rename_column() (FACSPy.dt.Metadata method) rename_values() (FACSPy.dt.Metadata method) run_data_setup() (FACSPy.ml.supervisedGating method) S sample_cells() (FACSPy.ml.supervisedGating method) sample_correlation() (in module FACSPy.pl) sample_distance() (in module FACSPy.pl) sample_ids_from_metadata() (in module FACSPy.sync) sample_ids_from_obs() (in module FACSPy.sync) save_dataset() (in module FACSPy) scanorama_integrate() (in module FACSPy.tl) select_channels() (FACSPy.dt.CofactorTable method) (FACSPy.dt.Metadata method) (FACSPy.dt.Panel method) set_cofactor() (FACSPy.dt.CofactorTable method) set_cofactors() (FACSPy.dt.CofactorTable method) set_columns() (FACSPy.dt.CofactorTable method) setup_classifier() (FACSPy.ml.supervisedGating method) subset() (FACSPy.dt.Metadata method) subset_fluo_channels() (in module FACSPy) subset_gate() (in module FACSPy) supervisedGating (class in FACSPy.ml) synchronize_dataset() (in module FACSPy.sync) T tight_layout (FACSPy.FACSPyConfig property) to_df() (FACSPy.dt.CofactorTable method) (FACSPy.dt.Metadata method) (FACSPy.dt.Panel method) train() (FACSPy.ml.supervisedGating method) transform() (in module FACSPy.dt) transformation_plot() (in module FACSPy.pl) tsne() (in module FACSPy.pl) (in module FACSPy.tl) tsne_samplewise() (in module FACSPy.pl) (in module FACSPy.tl) tune_hyperparameters() (FACSPy.ml.supervisedGating method) U umap() (in module FACSPy.pl) (in module FACSPy.tl) umap_samplewise() (in module FACSPy.pl) (in module FACSPy.tl) unsupervisedGating (class in FACSPy.ml) W write() (FACSPy.dt.CofactorTable method) (FACSPy.dt.Metadata method) (FACSPy.dt.Panel method)