References

References#

[CLL+05]

R R Coifman, S Lafon, A B Lee, M Maggioni, B Nadler, F Warner, and S W Zucker. Geometric diffusions as a tool for harmonic analysis and structure definition of data: diffusion maps. Proc. Natl. Acad. Sci. U. S. A., 102(21):7426–7431, May 2005.

[HBT15]

Laleh Haghverdi, Florian Buettner, and Fabian J Theis. Diffusion maps for high-dimensional single-cell analysis of differentiation data. Bioinformatics, 31(18):2989–2998, September 2015.

[HButtnerW+16]

Laleh Haghverdi, Maren Büttner, F Alexander Wolf, Florian Buettner, and Fabian J Theis. Diffusion pseudotime robustly reconstructs lineage branching. Nat. Methods, 13(10):845–848, October 2016.

[WAT18]

F Alexander Wolf, Philipp Angerer, and Fabian J Theis. SCANPY: large-scale single-cell gene expression data analysis. Genome Biol., 19(1):15, February 2018.